Very interesting concept, I'm enjoying it, but I'm finding a few things slightly frustrating.
The controls seem a bit buggy. Every minute or so, the Eye will just keep going in the same direction, usually crashing me into a soul and losing me points or making me unable to escape the reaper.
The intensity curve seems a bit slow.
The upgrades don't *feel* particularly useful. Might consider tweaking them to be a bit more noticeable, perhaps by making them more powerful per upgrade point.
For some reason, this game keeps crashing firefox and task manager. I enjoyed the first two games and am very sad that this one seems to hate my computer.
I like it in general. What I would look for in a sequel is a longer game, and also a "stealth" option. That is to say, if you infect another ship, they shouldn't immediately know which one you're in. Continuing to match formation might prevent them from knowing where you are.