From the 5 minutes I've spent fiddling with the hanger - it seems as if the squadron is controlled via the squadron tab and the single ship is controlled via the fleet tab. it works very well to keep the two separated. excellent work. also love the auto battle option for pve.
Another issue I'm running into is in the hanger - placing units while mousing over squadrons ends with me moving the squadron and not placing the units. with as convoluted as the hanger gets it is frustrating needing to clear the hanger to get a better view to move things back around because it is all in the red now. once again, fun game. I really enjoy it. only pointing out the issues I am running into.
fun. concerning pvp - when I have 60% of my ships alive and pushing forward but there is one enemy ship at the very bottom of the screen, this is not a tie. on the flip side, when ALL my ships are destroyed, this is not a tie.
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I've solved a lot of this problem, give it a try and let me know!