Awesome game! Only thing I'd change besides a bit of balancing issues is the way you can place soldier and strategy labs even when your fully upgraded. Maybe the ability to remove/change prefecture upgrades would be a good idea.
Hmm... needs some more work. Bike is kind of sluggish, landing is to unforgiving. Having some indicator that you're approaching the arena exit as opposed to being turned around would be nice. Why not let users map their own keys?
It would be really nice if the Programming section had step numbers in there...when you have 5 manipulators it gets hard to follow the step numbers on each to accurately program.