Two Suggestion: 1. Make an "Relay" upgrade that make certain components works only in a given (selected by the user) temperature range. 2. Since Heat exchangers doesnt transmit heat to reactor anymore its hard to keep temperature equilibrated at a given range, give to the players more control over this!
The game is too much polluted for a Bullet Hell... Big Enemies, Enemies Debris, Coins, Hearts, Mana/Fuel, Books, Dude's Items, Two big characters in the screen and a Polluted colorful background makes the things very hard to dodge enemy bullets. Also, the small hitbox of the items and the absence of a magnet upgrade make a very frustrating situation to catch these items.