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I think this is great. Im not sure but from what it looks like, the generation checker is trying differant ways for the muscles you put in to contract and release to make it move forward the fastest. So you have to make bones and make them in a way then can rotate then put muscles on in a way that is can move. I usually make legs and a body like a dog but with only 2 legs. You could make some really interesting things and see how fast they can go.
You have to wait at least 70 generations like it says though. Try to get the score thing to 400 though not 200.
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you are a seriously smart dude for making this. You deserve kudos. I bet this could be a college project or even a resume if you took the "game" off the internet and slapped a sticker that says "project" or "simulation"
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i showed this to my teachers and got extra credit! jk i showed my cousin that and he got extra altho god knows i could have used the extra credit :p
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http://www.kongregate.com/games/BryceSummer/walkinator?creature=228081 really simple to make, but apparently it acts like a living mine cart...