This game is very fun but very glitchy. If you make a sequel (which I hope you do) please get a couple beta testers. Glitch example: go to the room in the center of the spaceship (with the invisible alien and control panels) and face east. Your map will show more than usual...
There is a nice conversation about this game going on here:
http://www.kongregate.com/forums/3-general-gaming/topics/6476-super-space-3d-da-story?page=1#posts-1989216
I recommend you read it! c( :