I think Auto Collect should end up giving out +200% if you have all four points, something like +25% for the first one then two +50% and lastly the +75%, that would make the grind a little more bearable.
I also think Pixel cloning shouldn't take to long but that's more a personal thing.
And lastly I think you should add more Skill grids maybe something to do with Gen 4 and 5 but maybe make them cost two skill points.
Other than that good work so far, I like it, keep it up :D
Great overall game but I got stuck in many places... 4/5 only because of that and not enough interactivity with objects :) but keep up the good work my friend